PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g016990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 267aa    MW: 29798.5 Da    PI: 8.4107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g016990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08186233455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Sopen12g016990.1 186 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 233
                       8*************************8....3569999***********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.67E-11180237No hitNo description
SuperFamilySSF474596.94E-16180250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.173182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15185244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPYHCIPTAP PEVAEYGTFQ PPPQPVXPQP VIGFPLPVPP PGSVLEPSEY YARGYHSVPA  60
PPEVAEYGTF QPPPQPVIGF PLPVPPPGSV LEPSEYYARG YHSVPENFQQ DMFNLPVPTR  120
NDINESKKRK TIETPESSSA YSSPAISSRR KTGKGRGKRV KRDENEEEKL RQVVHVRAKR  180
GQATGSHSLA ERVRRGKINE RLRCLQDIVP GCYKSMGMAV MLDEIINYVQ SLQNQVEFLS  240
MKLSAASTYY DFNSERHFGD NAESKGI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-92HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060886.11e-105PREDICTED: LOW QUALITY PROTEIN: transcription factor BEE 1-like
SwissprotQ8GWK73e-52BEE3_ARATH; Transcription factor BEE 3
TrEMBLK4DEA41e-104K4DEA4_SOLLC; Uncharacterized protein
STRINGSolyc12g036470.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-51BR enhanced expression 1